publications

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2010

Hardy, Barry J; Douglas, Nicki; Helma, Christoph; Rautenberg, Micha; Jeliazkova, Nina; Jeliazkov, Vedrin; Nikolova, Ivelina; Benigni, Romualdo; Tcheremenskaia, Olga; Kramer, Stefan; Girschick, Tobias; Buchwald, Fabian; Wicker, Jörg; Karwath, Andreas; Gütlein, Martin; Maunz, Andreas; Sarimveis, Haralambos; Melagraki, Georgia; Afantitis, Antreas; Sopasakis, Pantelis; Gallagher, David; Poroikov, Vladimir; Filimonov, Dmitry; Zakharov, Alexey V; Lagunin, Alexey; Gloriozova, Tatyana; Novikov, Sergey; Skvortsova, Natalia; Druzhilovsky, Dmitry; Chawla, Sunil; Ghosh, Indira; Ray, Surajit; Patel, Hitesh; Escher, Sylvia

Collaborative development of predictive toxicology applications Journal Article

J. Cheminformatics, 2 , pp. 7, 2010.

Abstract | Links | BibTeX | Tags: crossvalidation, data mining, QSAR, scientific knowledge

2009

Schulz, Hannes; Kersting, Kristian; Karwath, Andreas

ILP, the Blind, and the Elephant: Euclidean Embedding of Co-proven Queries Conference

Inductive Logic Programming, 19th International Conference, ILP 2009, Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2009, ISBN: 978-3-642-13839-3.

Abstract | Links | BibTeX | Tags: cheminformatics, dimensionality reduction, inductive logic programming, relational learning, scientific knowledge, visualization

2008

Karwath, Andreas; Kersting, Kristian; Landwehr, Niels

Boosting Relational Sequence Alignments Conference

The 8th IEEE International Conference on Data Mining, ICDM 2008, IEEE, 2008, ISBN: 978-0-7695-3502-9.

Abstract | Links | BibTeX | Tags: inductive logic programming, machine learning, relational learning, scientific knowledge

Kersting, Kristian; De Raedt, Luc ; Gutmann, Bernd; Karwath, Andreas; Landwehr, Niels

Relational Sequence Learning Book Chapter

Probabilistic Inductive Logic Programming - Theory and Applications, 4911 , pp. 28-55, Springer Verlag, Berlin Heidelberg, Germany, 2008, ISBN: 978-3-540-78651-1.

Abstract | Links | BibTeX | Tags: inductive logic programming, machine learning, relational learning, scientific knowledge

2007

Karwath, Andreas; Kersting, Kristian

Relational Sequence Alignments and Logos Conference

Inductive Logic Programming, 16th International Conference, ILP 2006, 4455 , Lecture Notes in Computer Science Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2007, ISBN: 978-3-540-73846-6.

Abstract | Links | BibTeX | Tags: bioinformatics, inductive logic programming, relational learning, scientific knowledge

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Logic and the Automatic Acquisition of Scientific Knowledge: An Application to Functional Genomics Conference

Computational Discovery of Scientific Knowledge, Introduction, Techniques, and Applications in Environmental and Life Sciences, 4660 , Lecture Notes in Computer Science Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2007, ISBN: 978-3-540-73919-7.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

2006

Karwath, Andreas; De Raedt, Luc

SMIREP: Predicting Chemical Activity from SMILES Journal Article

Journal of Chemical Information and Modeling, 46 (6), pp. 2432 - 2444, 2006.

Abstract | Links | BibTeX | Tags: cheminformatics, graph mining, machine learning, QSAR, relational learning, scientific knowledge

Karwath, Andreas; Kersting, Kristian

Relational Sequence Alignments Conference

Proc. The 4th International Workshop on Mining and Learning with Graphs, MLG 2006, % editor = Thomas Gärtner and Gemma C. Garriga and Thorsten Meinl, % month = September, 2006, (workshop).

BibTeX | Tags: bioinformatics, cheminformatics, relational learning, scientific knowledge

Clare, Amanda; Karwath, Andreas; Ougham, Helen; King, Ross D

Functional bioinformatics for Arabidopsis thaliana Journal Article

Bioinformatics, 22 (9), pp. 1130-1136, 2006.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

2002

Karwath, Andreas

Large Logical Đatabases and their Applications to Molecular Biology PhD Thesis

University of Wales, Aberystwyth, 2002.

BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

2001

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

The utility of different representations of protein sequence for predicting functional class Journal Article

Bioinformatics, 17 (5), pp. 445-454, 2001.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning, scientific knowledge

2000

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Accurate prediction of protein functional class from sequence in the Mycobacterium tuberculosis and Escherichia coli genomes using data mining. Journal Article

Yeast (Comparative and Functional Genomics), 17 , pp. 283-293, 2000.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning, scientific knowledge

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Logic and the Automatic Acquisition of Scientific Knowledge Journal Article

EACIS (Electronic Articles in Computer and Information Science), 5 (031), 2000.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, scientific knowledge