publications

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2018

Geilke, Michael; Karwath, Andreas; Frank, Eibe; Kramer, Stefan

Online estimation of discrete, continuous, and conditional joint densities using classifier chains Journal Article

Data Mining and Knowledge Discovery, 32 (3), pp. 561-603, 2018, ISSN: 1384-5810.

Abstract | Links | BibTeX | Tags: data mining, density estimation, machine learning, stream mining

2016

Geilke, Michael ; Karwath, Andreas ; Kramer, Stefan

Online density estimation of heterogeneous data streams in higher dimensions Conference

Machine learning and knowledge discovery in databases : European Conference, ECML PKDD 2016, Riva del Garda, Italy, September 19-23, 2016 : Proceedings Part 1, 2016.

Abstract | Links | BibTeX | Tags: data mining, density estimation, stream mining

2014

Gütlein, Martin; Karwath, Andreas; Kramer, Stefan

CheS-Mapper 2.0 for visual validation of (Q)SAR models Journal Article

J. Cheminformatics, 6 (1), pp. 41, 2014.

Abstract | Links | BibTeX | Tags: cheminformatics, data mining, graph mining, validation, visualization

2012

Seeland, Madeleine; Karwath, Andreas; Kramer, Stefan

A structural cluster kernel for learning on graphs Conference

The 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD 2012, ACM ACM, New York, NY, USA, 2012, ISBN: 978-1-4503-1462-6.

Abstract | Links | BibTeX | Tags: cheminformatics, clustering, data mining, kernels, QSAR, suport vector machines

2010

Hardy, Barry J; Douglas, Nicki; Helma, Christoph; Rautenberg, Micha; Jeliazkova, Nina; Jeliazkov, Vedrin; Nikolova, Ivelina; Benigni, Romualdo; Tcheremenskaia, Olga; Kramer, Stefan; Girschick, Tobias; Buchwald, Fabian; Wicker, Jörg; Karwath, Andreas; Gütlein, Martin; Maunz, Andreas; Sarimveis, Haralambos; Melagraki, Georgia; Afantitis, Antreas; Sopasakis, Pantelis; Gallagher, David; Poroikov, Vladimir; Filimonov, Dmitry; Zakharov, Alexey V; Lagunin, Alexey; Gloriozova, Tatyana; Novikov, Sergey; Skvortsova, Natalia; Druzhilovsky, Dmitry; Chawla, Sunil; Ghosh, Indira; Ray, Surajit; Patel, Hitesh; Escher, Sylvia

Collaborative development of predictive toxicology applications Journal Article

J. Cheminformatics, 2 , pp. 7, 2010.

Abstract | Links | BibTeX | Tags: crossvalidation, data mining, QSAR, scientific knowledge

2007

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Logic and the Automatic Acquisition of Scientific Knowledge: An Application to Functional Genomics Conference

Computational Discovery of Scientific Knowledge, Introduction, Techniques, and Applications in Environmental and Life Sciences, 4660 , Lecture Notes in Computer Science Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2007, ISBN: 978-3-540-73919-7.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

2006

Clare, Amanda; Karwath, Andreas; Ougham, Helen; King, Ross D

Functional bioinformatics for Arabidopsis thaliana Journal Article

Bioinformatics, 22 (9), pp. 1130-1136, 2006.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

Backofen, Rolf; Borrmann, Hans-Gunther; Deck, Werner; Dedner, Andreas; De Raedt, Luc ; Desch, Klaus; Diesmann, Markus; Geier, Martin; Greiner, Andreas; Hess, Wolfgang R; Honerkamp, Josef; Jankowski, Stefan; Krossing, Ingo; Liehr, Andreas W; Karwath, Andreas; Klöfkorn, Robert; Pesché, Raphaël; Potjans, Tobias C; Röttger, Michael C; Schmidt-Thieme, Lars; Schneider, Gerhard; Voß, Björn; Wiebelt, Bernd; Wienemann, Peter; Winterer, Volker-Henning

A Bottom-up approach to Grid-Computing at a University: the Black-Forest-Grid Initiative Journal Article

Praxis der Informationsverarbeitung und Kommunikation, 29 (2), pp. 81-87, 2006.

Abstract | Links | BibTeX | Tags: data mining, HPC

2005

Stolle, Christian; Karwath, Andreas; De Raedt, Luc

CLASSIC'CL: an integrated ILP system Conference

Proc. 8th International Conference of Discovery Science, DS 2005, 3735 , Lecture Notes in Artificial Intelligence Springer, 2005, ISBN: 978-3-540-29230-2, (Conference).

Abstract | Links | BibTeX | Tags: data mining, machine learning, relational learning

2002

Karwath, Andreas; King, Ross D

Homology Induction: the use of machine learning to improve sequence similarity searches Journal Article

BMC Bioinformatics, 3 (1), 2002.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning

Karwath, Andreas

Large Logical Đatabases and their Applications to Molecular Biology PhD Thesis

University of Wales, Aberystwyth, 2002.

BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

2001

Karwath, Andreas; King, Ross D

An automated ILP server in the field of bioinformatics Conference

The Eleventh International Conference on Inductive Logic Programming, ILP 2001, 2157 , Lecture Notes in Computer Science Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2001, ISBN: 978-3-540-42538-0.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

The utility of different representations of protein sequence for predicting functional class Journal Article

Bioinformatics, 17 (5), pp. 445-454, 2001.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning, scientific knowledge

2000

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Accurate prediction of protein functional class from sequence in the Mycobacterium tuberculosis and Escherichia coli genomes using data mining. Journal Article

Yeast (Comparative and Functional Genomics), 17 , pp. 283-293, 2000.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning, scientific knowledge

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Logic and the Automatic Acquisition of Scientific Knowledge Journal Article

EACIS (Electronic Articles in Computer and Information Science), 5 (031), 2000.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, scientific knowledge

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Genome scale prediction of protein functional class from sequence using data mining Conference

The Sixth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD 2000, The Association for Computing Machinery, New York, USA, 2000.

Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning