publications

2017

Karwath, Andreas ; Hubrich, Markus ; Kramer, Stefan

Convolutional Neural Networks for the Identification of Regions of Interests in PET Scans: A Study of Representation Learning for Diagnosing Alzheimer's Disease Conference

Artificial Intelligence in Medicine: 16th Conference on Artificial Intelligence in Medicine, AIME 2017, Vienna, Austria, June 21-24, 2017, Proceedings, Springer Springer International Publishing, Cham, 2017, ISBN: 978-3-319-59758-4.

Abstract | Links | BibTeX | Tags: alzheimer, deep learning, machine learning, medicine, visualization

2016

Geilke, Michael ; Karwath, Andreas ; Kramer, Stefan

Online density estimation of heterogeneous data streams in higher dimensions Conference

Machine learning and knowledge discovery in databases : European Conference, ECML PKDD 2016, Riva del Garda, Italy, September 19-23, 2016 : Proceedings Part 1, 2016.

Abstract | Links | BibTeX | Tags: data mining, density estimation, stream mining

2015

Geilke, Michael; Karwath, Andreas; Kramer, Stefan

Modeling recurrent distributions in streams using possible worlds Conference

2015 IEEE International Conference on Data Science and Advanced Analytics, DSAA 2015, IEEE, 2015, ISBN: 978-1-4673-8272-4.

Abstract | Links | BibTeX | Tags: density estimation, machine learning, possible worlds, stream mining

2014

Geilke, Michael; Karwath, Andreas; Kramer, Stefan

A probabilistic condensed representation of data for stream mining Conference

International Conference on Data Science and Advanced Analytics, DSAA 2014, IEEE, 2014.

Abstract | Links | BibTeX | Tags: density estimation, machine learning, stream mining

Gütlein, Martin; Karwath, Andreas; Kramer, Stefan

CheS-Mapper 2.0 for visual validation of (Q)SAR models Journal Article

J. Cheminformatics, 6 (1), pp. 41, 2014.

Abstract | Links | BibTeX | Tags: cheminformatics, data mining, graph mining, validation, visualization

Seeland, Madeleine; Karwath, Andreas; Kramer, Stefan

Structural clustering of millions of molecular graphs Conference

Symposium on Applied Computing, SAC 2014, ACM ACM, New York, NY, USA, 2014.

Abstract | Links | BibTeX | Tags:

Seeland, Madeleine; Maunz, Andreas; Karwath, Andreas; Kramer, Stefan

Extracting information from support vector machines for pattern-based classification Conference

Symposium on Applied Computing, SAC 2014, ACM ACM, New York, NY, USA, 2014.

Abstract | Links | BibTeX | Tags:

2013

Geilke, Michael; Frank, Eibe; Karwath, Andreas; Kramer, Stefan

Online Estimation of Discrete Densities Conference

IEEE 13th International Conference on Data Mining, ICDM 2013, IEEE, 2013, ISSN: 1550-4786.

Abstract | Links | BibTeX | Tags: density estimation, machine learning, stream mining

Gütlein, Martin; Helma, Christoph; Karwath, Andreas; Kramer, Stefan

A Large-Scale Empirical Evaluation of Cross-Validation and External Test Set Validation in (Q)SAR Journal Article

Molecular Informatics, 32 (5-6), pp. 516-528, 2013.

Abstract | Links | BibTeX | Tags: cheminformatics, crossvalidation, external validation, QSAR

2012

Seeland, Madeleine; Karwath, Andreas; Kramer, Stefan

A structural cluster kernel for learning on graphs Conference

The 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD 2012, ACM ACM, New York, NY, USA, 2012, ISBN: 978-1-4503-1462-6.

Abstract | Links | BibTeX | Tags: cheminformatics, clustering, data mining, kernels, QSAR, suport vector machines

Gütlein, Martin; Karwath, Andreas; Kramer, Stefan

CheS-Mapper - Chemical Space Mapping and Visualization in 3D Journal Article

J. Cheminformatics, 4 , pp. 7, 2012.

Abstract | Links | BibTeX | Tags: cheminformatics, clustering, dimensionality reduction, QSAR, visualization

Grzonka, Slawomir; Karwath, Andreas; Dijoux, Frederic; Burgard, Wolfram

Activity-Based Estimation of Human Trajectories Journal Article

IEEE Transactions on Robotics, 28 (1), pp. 234-245, 2012.

Abstract | Links | BibTeX | Tags: activity recognition, machine learning, simultaneous localization and mapping

2010

Hardy, Barry J; Douglas, Nicki; Helma, Christoph; Rautenberg, Micha; Jeliazkova, Nina; Jeliazkov, Vedrin; Nikolova, Ivelina; Benigni, Romualdo; Tcheremenskaia, Olga; Kramer, Stefan; Girschick, Tobias; Buchwald, Fabian; Wicker, Jörg; Karwath, Andreas; Gütlein, Martin; Maunz, Andreas; Sarimveis, Haralambos; Melagraki, Georgia; Afantitis, Antreas; Sopasakis, Pantelis; Gallagher, David; Poroikov, Vladimir; Filimonov, Dmitry; Zakharov, Alexey V; Lagunin, Alexey; Gloriozova, Tatyana; Novikov, Sergey; Skvortsova, Natalia; Druzhilovsky, Dmitry; Chawla, Sunil; Ghosh, Indira; Ray, Surajit; Patel, Hitesh; Escher, Sylvia

Collaborative development of predictive toxicology applications Journal Article

J. Cheminformatics, 2 , pp. 7, 2010.

Abstract | Links | BibTeX | Tags: crossvalidation, data mining, QSAR, scientific knowledge

Grzonka, Slawomir; Dijoux, Frederic; Karwath, Andreas; Burgard, Wolfram

Mapping indoor environments based on human activity Conference

IEEE International Conference on Robotics and Automation, ICRA 2010, IEEE, 2010, ISBN: 978-1-4244-5038-1.

Abstract | Links | BibTeX | Tags: activity recognition, machine learning, simultaneous localization and mapping

Grzonka, Slawomir; Dijoux, Frederic; Karwath, Andreas; Burgard, Wolfram

Learning Maps of Indoor Environments Based on Human Activity Conference

Embedded Reasoning, Papers from the 2010 AAAI Spring Symposium, 2010.

Abstract | Links | BibTeX | Tags: activity recognition, localization, machine learning, mobile systems and mobility, simultaneous localization and mapping, social robotics

2009

Gütlein, Martin; Frank, Eibe; Hall, Mark A; Karwath, Andreas

Large-scale attribute selection using wrappers Conference

The IEEE Symposium on Computational Intelligence and Data Mining, CIDM 2009, IEEE, 2009, ISBN: 978-1-4244-2765-9.

Abstract | Links | BibTeX | Tags: crossvalidation, machine learning

Schulz, Hannes; Kersting, Kristian; Karwath, Andreas

ILP, the Blind, and the Elephant: Euclidean Embedding of Co-proven Queries Conference

Inductive Logic Programming, 19th International Conference, ILP 2009, Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2009, ISBN: 978-3-642-13839-3.

Abstract | Links | BibTeX | Tags: cheminformatics, dimensionality reduction, inductive logic programming, relational learning, scientific knowledge, visualization

2008

Karwath, Andreas; Kersting, Kristian; Landwehr, Niels

Boosting Relational Sequence Alignments Conference

The 8th IEEE International Conference on Data Mining, ICDM 2008, IEEE, 2008, ISBN: 978-0-7695-3502-9.

Abstract | Links | BibTeX | Tags: inductive logic programming, machine learning, relational learning, scientific knowledge

Kersting, Kristian; De Raedt, Luc ; Gutmann, Bernd; Karwath, Andreas; Landwehr, Niels

Relational Sequence Learning Book Chapter

Probabilistic Inductive Logic Programming - Theory and Applications, 4911 , pp. 28-55, Springer Verlag, Berlin Heidelberg, Germany, 2008, ISBN: 978-3-540-78651-1.

Abstract | Links | BibTeX | Tags: inductive logic programming, machine learning, relational learning, scientific knowledge

2007

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Logic and the Automatic Acquisition of Scientific Knowledge: An Application to Functional Genomics Conference

Computational Discovery of Scientific Knowledge, Introduction, Techniques, and Applications in Environmental and Life Sciences, 4660 , Lecture Notes in Computer Science Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2007, ISBN: 978-3-540-73919-7.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

Karwath, Andreas; Kersting, Kristian

Relational Sequence Alignments and Logos Conference

Inductive Logic Programming, 16th International Conference, ILP 2006, 4455 , Lecture Notes in Computer Science Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2007, ISBN: 978-3-540-73846-6.

Abstract | Links | BibTeX | Tags: bioinformatics, inductive logic programming, relational learning, scientific knowledge

2006

Karwath, Andreas; De Raedt, Luc

SMIREP: Predicting Chemical Activity from SMILES Journal Article

Journal of Chemical Information and Modeling, 46 (6), pp. 2432 - 2444, 2006.

Abstract | Links | BibTeX | Tags: cheminformatics, graph mining, machine learning, QSAR, relational learning, scientific knowledge

Karwath, Andreas; Kersting, Kristian

Relational Sequence Alignments Conference

Proc. The 4th International Workshop on Mining and Learning with Graphs, MLG 2006, % editor = Thomas Gärtner and Gemma C. Garriga and Thorsten Meinl, % month = September, 2006, (workshop).

BibTeX | Tags: bioinformatics, cheminformatics, relational learning, scientific knowledge

Clare, Amanda; Karwath, Andreas; Ougham, Helen; King, Ross D

Functional bioinformatics for Arabidopsis thaliana Journal Article

Bioinformatics, 22 (9), pp. 1130-1136, 2006.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

Backofen, Rolf; Borrmann, Hans-Gunther; Deck, Werner; Dedner, Andreas; De Raedt, Luc ; Desch, Klaus; Diesmann, Markus; Geier, Martin; Greiner, Andreas; Hess, Wolfgang R; Honerkamp, Josef; Jankowski, Stefan; Krossing, Ingo; Liehr, Andreas W; Karwath, Andreas; Klöfkorn, Robert; Pesché, Raphaël; Potjans, Tobias C; Röttger, Michael C; Schmidt-Thieme, Lars; Schneider, Gerhard; Voß, Björn; Wiebelt, Bernd; Wienemann, Peter; Winterer, Volker-Henning

A Bottom-up approach to Grid-Computing at a University: the Black-Forest-Grid Initiative Journal Article

Praxis der Informationsverarbeitung und Kommunikation, 29 (2), pp. 81-87, 2006.

Abstract | Links | BibTeX | Tags: data mining, HPC

2005

Stolle, Christian; Karwath, Andreas; De Raedt, Luc

CLASSIC'CL: an integrated ILP system Conference

Proc. 8th International Conference of Discovery Science, DS 2005, 3735 , Lecture Notes in Artificial Intelligence Springer, 2005, ISBN: 978-3-540-29230-2, (Conference).

Abstract | Links | BibTeX | Tags: data mining, machine learning, relational learning

2004

Bringmann, Björn; Karwath, Andreas

Frequent SMILES Miscellaneous

Lernen, Wissensentdeckung und Adaptivität, Workshop GI Fachgruppe Maschinelles Lernen, part of LWA, 2004, (Berlin, Germany).

Abstract | BibTeX | Tags: cheminformatics, graph mining, machine learning

Karwath, Andreas; De Raedt, Luc

Predictive Graph Mining Conference

The International Workshop on Mining Graphs, Trees and Sequences, MGTS 2004, 2004, (workshop).

BibTeX | Tags: cheminformatics, graph mining, machine learning, QSAR

Karwath, Andreas; De Raedt, Luc

Predictive Graph Mining Conference

The 7th International Conference of Discovery Science, DS 2004, 3245 , Lecture Notes in Artificial Intelligence Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2004, ISBN: 978-3-540-23357-2.

Abstract | Links | BibTeX | Tags: cheminformatics, graph mining, machine learning, QSAR

2002

Karwath, Andreas; King, Ross D

Homology Induction: the use of machine learning to improve sequence similarity searches Journal Article

BMC Bioinformatics, 3 (1), 2002.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning

Karwath, Andreas

Large Logical Đatabases and their Applications to Molecular Biology PhD Thesis

University of Wales, Aberystwyth, 2002.

BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning, scientific knowledge

2001

Karwath, Andreas; King, Ross D

An automated ILP server in the field of bioinformatics Conference

The Eleventh International Conference on Inductive Logic Programming, ILP 2001, 2157 , Lecture Notes in Computer Science Springer-Verlag Berlin Heidelberg Springer Verlag, Berlin Heidelberg, Germany, 2001, ISBN: 978-3-540-42538-0.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, machine learning, relational learning

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

The utility of different representations of protein sequence for predicting functional class Journal Article

Bioinformatics, 17 (5), pp. 445-454, 2001.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning, scientific knowledge

2000

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Accurate prediction of protein functional class from sequence in the Mycobacterium tuberculosis and Escherichia coli genomes using data mining. Journal Article

Yeast (Comparative and Functional Genomics), 17 , pp. 283-293, 2000.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning, scientific knowledge

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Logic and the Automatic Acquisition of Scientific Knowledge Journal Article

EACIS (Electronic Articles in Computer and Information Science), 5 (031), 2000.

Abstract | Links | BibTeX | Tags: bioinformatics, data mining, scientific knowledge

King, Ross D; Karwath, Andreas; Clare, Amanda; Dehaspe, Luc

Genome scale prediction of protein functional class from sequence using data mining Conference

The Sixth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD 2000, The Association for Computing Machinery, New York, USA, 2000.

Links | BibTeX | Tags: bioinformatics, data mining, inductive logic programming, relational learning